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Bio-Toolkit

Protein pI & Charge Curve

Protein isoelectric point (pI) and pH–charge titration curve

Q(pH) = Σ Q_i(pH) ; pI when Q(pH) = 0
Cleaned length: 0 aaWhitespace / numbers stripped automatically
🧪 ProtParam (ExPASy) default — academic baseline

Standard for protein purification / IEF (isoelectric focusing) analysis. Derived by regression on immobilized pH gradient gel data — best match with electrophoresis experiments.

📚 Bjellqvist et al. 1993, Electrophoresis 14:1023 (DOI 10.1002/elps.1150150171)

Tool Guide

Definition

The isoelectric point (pI) is the theoretical pH at which the sum of all acidic and basic ionizable residue charges balances to zero. This tool solves pI via the Henderson-Hasselbalch equation and bisection (tolerance 0.001) and renders the full pH 0–14 net-charge titration curve plus the physiological pH 7.4 marker. Five pKa scales toggle: Bjellqvist, EMBOSS, DTASelect, IPC2-Protein, and IPC2-Peptide.

Purpose

(1) Choose ion-exchange chromatography (IEX) buffer pH (above pI → net negative → anion exchanger) (2) Predict isoelectric-focusing (IEF) band position (3) Avoid solubility minimum near pI when designing storage buffers (4) Estimate net charge at physiological pH 7.4 for drug interactions / LNP encapsulation

How to Use

① Paste protein sequence (1-letter, A–Y) — whitespace / digits auto-stripped ② Pick a pKa scale: • Bjellqvist (default, ProtParam-compatible) • EMBOSS (iep standard) • DTASelect (proteomics) • IPC2 Protein / Peptide (Kozlowski 2021 ML) ③ Click a Load Example (BSA, Lysozyme, Insulin, Polylysine K10, MKDR) ④ Output: • pI to 2 decimals • Q @ pH 7.4 (physiological marker) • Length + ionizable residue counts (D/E/H/C/Y/K/R) • Charge vs pH titration curve (self-drawn SVG with Q=0 / pI / pH 7.4 guides)

Examples

Example 1) BSA (Bovine Serum Albumin) → Bjellqvist → pI ≈ 5.60 → Q @ pH 7.4 ≈ −17.8 → strong net negative → binds Q-sepharose / anion exchanger Example 2) Lysozyme (Chicken) → EMBOSS → pI ≈ 9.21 / IPC2 Protein → pI ≈ 8.4 → Q @ pH 7.4 ≈ +7.4 (Bjellqvist) → CM-sepharose / cation exchanger Example 3) Polylysine K10 → pI ≈ 11 across scales → strong net positive at physiological pH Example 4) Insulin heterodimer → pI ≈ 5.4 → amenable to isoelectric precipitation purification

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🔗 Bio Resources

🔬NCBI PubMed🧪AlphaFold DB🏥ClinicalTrials.gov📄bioRxiv🚀ASGCT🏛️Broad Institute

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